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ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
Residue >=
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Molecule: [Protein molecule containing the word as query]
Source: [Source organism of protein ]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d1a2oa1 c.23.1.1 140 see topology u'Chemotaxis response regulator protein-glutamate methylesterase' Salmonella enterica
ASTRAL-1.75B d1a32a_ a.16.1.2 85 see topology u'30S ribosomal protein S15' Geobacillus stearothermophilus
ASTRAL-1.75B d1a34a_ b.121.7.1 147 see topology u'Coat protein' Tobacco virtovirus 1
ASTRAL-1.75B d1a3aa_ d.112.1.1 145 see topology u'PTS system mannitol-specific EIICBA component' Escherichia coli
ASTRAL-1.75B d1a3ca_ c.61.1.1 166 see topology u'Bifunctional protein PyrR' Bacillus subtilis
ASTRAL-1.75B d1a3qa2 b.2.5.3 184 see topology u'Nuclear factor NF-kappa-B p100 subunit' Homo sapiens
ASTRAL-1.75B d1a3wa3 c.49.1.1 134 see topology u'Pyruvate kinase 1' Saccharomyces cerevisiae
ASTRAL-1.75B d1a41a_ d.163.1.2 221 see topology u'DNA topoisomerase 1B' Vaccinia virus
ASTRAL-1.75B d1a4ia1 c.2.1.7 160 see topology u'C-1-tetrahydrofolate synthase, cytoplasmic' Homo sapiens
ASTRAL-1.75B d1a4ia2 c.58.1.2 125 see topology u'C-1-tetrahydrofolate synthase, cytoplasmic' Homo sapiens
ASTRAL-1.75B d1a4pa_ a.39.1.2 92 see topology u'Protein S100-A10' Homo sapiens
ASTRAL-1.75B d1a5ta1 a.80.1.1 117 see topology u"DNA polymerase III subunit delta'" Escherichia coli
ASTRAL-1.75B d1a5ta2 c.37.1.20 207 see topology u"DNA polymerase III subunit delta'" Escherichia coli
ASTRAL-1.75B d1a62a1 a.140.3.1 44 see topology u'Transcription termination factor Rho' Escherichia coli
ASTRAL-1.75B d1a62a2 b.40.4.5 78 see topology u'Transcription termination factor Rho' Escherichia coli
ASTRAL-1.75B d1a6ca1 b.121.4.2 176 see topology u'Capsid protein' Tobacco ringspot virus
ASTRAL-1.75B d1a6ca2 b.121.4.2 172 see topology u'Capsid protein' Tobacco ringspot virus
ASTRAL-1.75B d1a6ca3 b.121.4.2 165 see topology u'Capsid protein' Tobacco ringspot virus
ASTRAL-1.75B d1a6fa_ d.14.1.2 113 see topology u'Ribonuclease P protein component' Bacillus subtilis
ASTRAL-1.75B d1a6ja_ d.112.1.1 150 see topology u'Nitrogen regulatory protein' Escherichia coli

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins